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    13 repositories

    • fetal-brain-atlas

      Public
      conditional fetal brain atlas learning
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • temporal-representation-learning

      Public
      This repository provides a supplementary code for Temporal Representation Learning of Phenotype Trajectories for pCR Prediction in Breast Cancer paper. In this work we designed a representation learning method for treatment/dissease progression learning.
      representation-learningbreast-cancer
      Python
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • mtl-ynet

      Public
      Code for Improving Vessel Segmentation with Multi-Task Learning and Auxiliary Data Available Only During Model Training (Sobotka et al. CMIG 2024)
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Sep 5, 2025Sep 5, 2025

    • LesiOnTime

      Public
      LesiOnTime - Joint Temporal and Clinical Modeling for Small Breast Lesion Segmentation in Longitudinal DCE-MRI
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • FetGEs

      Public
      FetGEs: a Deep Learning Approach for Fetal MRI Ganglionic Eminence Segmentation
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • LiverDCN

      Public
      Code for Discovery of Disease, Progress and Treatment Response Markers in Liver Disease with Unsupervised Deep Clustering
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • EvolutionOfCorticalShape

      Public
      Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship
      geometryevolutionmorphologyneuroscienceneuroimagingsurfaceneuroimaging-dataneuroscience-methods
      Shell
      •3•12•0•0•Updated Feb 3, 2025Feb 3, 2025

    • fetalfMRIproc

      Public
      custom workflow for in-utero resting-state fMRI analysis, including preprocessing, quality control, and simulation the hemodynamic response function
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • mamma_anomaly_detection

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • functional-twin-analysis

      Public
      This repository contains code to our paper "Disentangling cortical functional connectivity strength and topography reveals divergent roles of genes and environment"
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 26, 2023Jul 26, 2023

    • dynamicmemory

      Public
      Code for continual machine learning using a dynamic memory (Perkonigg et al. Nat Comms 2021)
      Python
      •
      Apache License 2.0
      •4•16•1•0•Updated Jul 26, 2023Jul 26, 2023

    • graph_autoencoder

      Public
      Python
      •0•0•0•0•Updated May 4, 2022May 4, 2022

    • casa

      Public
      Code for Continual Active Learning Using Pseudo-Domains for Limited Labelling Resources and Changing Acquisition Characteristics published in MELBA 2021
      Jupyter Notebook
      •1•1•0•0•Updated Mar 16, 2022Mar 16, 2022