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The cp -l script isn't well defined enough,

Status: Open.

#7 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on Jul 27, 2018

In single-end data, with lower denoising, obitab will not see the *_HS.fa file

Status: Open.

#6 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on May 11, 2018

The solution using 'unidentified' results in the need for an extra subsequent script

Status: Open.

#5 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on May 11, 2018

Different script required for read merging for multiplexed or demultiplexed?

Status: Open.

#4 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on May 11, 2018

Does the input need to be .fastq.gz or .fastq ?

Status: Open.

#3 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on May 11, 2018

SE data - the cutadapt output file name is needed for scripts

Status: Open.

#2 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on May 11, 2018

Extra unneeded folder for samples in SE data analysis

Status: Open.

#1 In bensutherland/eDNA_metabarcoding;

· bensutherland opened on May 11, 2018