The solution using 'unidentified' results in the need for an extra subsequent script

Can we re-name the 'unidentified' files to not require a subsequent different script for after the '02_ngsfilter_SE_exp_unident.sh', that is, can we somehow make only a single obiannotate.sh script? Currently there are two: obiannotate_unident.sh and obiannotate_ident.sh. 