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Cherry-pick from master to Skyline release branch

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cherrypick-to-release.yml
15 workflow run results
15 workflow run results

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Skyline: Fix issues in the HTML versions of tutorials Cherry-pick from master to Skyline release branch #2216: Issue comment #3157 (comment) created by eduardo-proteinms
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2215: Issue comment #3154 (comment) created by bspratt
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2214: Issue comment #3154 (comment) created by brendanx67
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2213: Issue comment #3154 (comment) created by bspratt
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2212: Issue comment #3154 (comment) created by bspratt
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2211: Issue comment #3154 (comment) created by brendanx67
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2210: Issue comment #3154 (comment) edited by brendanx67
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Fix unescaped ampersands in msfragger pepXML output Cherry-pick from master to Skyline release branch #2209: Issue comment #3154 (comment) created by brendanx67
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AutoQC Loader updates Cherry-pick from master to Skyline release branch #2208: Issue comment #3131 (comment) created by vagisha
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Remove code for ignoring ambiguous spectra from MSFReader.cpp Cherry-pick from master to Skyline release branch #2207: Issue comment #3111 (comment) created by brendanx67
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Remove code for ignoring ambiguous spectra from MSFReader.cpp Cherry-pick from master to Skyline release branch #2206: Issue comment #3111 (comment) created by nickshulman
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Add mammoth submodule to dev tools Cherry-pick from master to Skyline release branch #2205: Issue comment #3147 (comment) created by eduardo-proteinms
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Fixed case of CiRT peptides not covering RT range Cherry-pick from master to Skyline release branch #2204: Issue comment #2165 (comment) created by brendanx67
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Allow test zip files to be folders Cherry-pick from master to Skyline release branch #2203: Issue comment #3144 (comment) created by nickshulman
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DIA search workflow UI changes Cherry-pick from master to Skyline release branch #2202: Issue comment #3134 (comment) created by brendanx67
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