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Cherry-pick from master to Skyline release branch

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6 workflow run results
6 workflow run results

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AutoQC Loader updates
Cherry-pick from master to Skyline release branch #2208: Issue comment #3131 (comment) created by vagisha
18s
Remove code for ignoring ambiguous spectra from MSFReader.cpp
Cherry-pick from master to Skyline release branch #2207: Issue comment #3111 (comment) created by brendanx67
23s
Remove code for ignoring ambiguous spectra from MSFReader.cpp
Cherry-pick from master to Skyline release branch #2206: Issue comment #3111 (comment) created by nickshulman
23s
Add mammoth submodule to dev tools
Cherry-pick from master to Skyline release branch #2205: Issue comment #3147 (comment) created by eduardo-proteinms
15s
Fixed case of CiRT peptides not covering RT range
Cherry-pick from master to Skyline release branch #2204: Issue comment #2165 (comment) created by brendanx67
25s
Allow test zip files to be folders
Cherry-pick from master to Skyline release branch #2203: Issue comment #3144 (comment) created by nickshulman
16s