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Materials of the project iDREM-BTC(Individualized Dynamic Prognostic Model for Immuno-chemotherapy in Advanced Biliary Tract Cancer)

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中文版

说明

  1. 本库为文章 Real-time Multidimensional Prognostic System for Immuno-chemotherapy in Advanced Biliary Tract Cancer 的模型构建源代码,样例数据与网页工具使用说明。
  2. 为了方便使用,我们制作了网页shiny工具,工具需要您上传您自己的数据并对每个患者进行动态实时预测,如果您上传多个患者的数据,可以评价基于多个患者的模型性能。
  3. 网页版工具有模型构建代码及变量说明,样例数据提供了变量的详细定义情况,如果您需要根据您自己的数据进行预测,请参考样例数据整理您的数据并上传shiny工具。
  4. 样例数据样例见example_data文件夹,其中example_data_iDREM_BTC.xlsx文件为普通模型的测试文件,example_data_iDREM_pro_BTC.xlsx为扩展模型(增加了PDL1,TMB及MSI状态数据)的测数据。
  5. 由于动态轨迹计算及预测需要一定的算力,如果您的数据较大可联系我索取源码在本地运行。
  6. 此项目仅可应用于科研目的。

shiny快速应用可以应用以下网址

http://xiyoucloud.pro:20229/

中文版视频说明书见B站链接

https://www.bilibili.com/video/BV19ogrzDEJP/?vd_source=42c88fb50fd1a48cadfbbf87f177878b

English

Description

  1. This library contains the model building source code, sample data and instructions for using the web tool for the article "Real-time Multidimensional Prognostic System for Immuno-chemotherapy in Advanced Biliary Tract Cancer".
  2. For ease of use, we have created a web shiny tool. The tool requires you to upload your own data and make dynamic real-time predictions for each patient. If you upload data for multiple patients, you can evaluate the performance of the model based on multiple patients.
  3. The web version of the tool has model building code and variable descriptions. The sample data provides detailed definitions of the variables. If you need to make predictions based on your own data, please refer to the sample data to organize your data and upload it to the shiny tool.
  4. For sample data examples, see the example_data folder, where the example_data_iDREM_BTC.xlsx file is the test file for the conventional Model, and the example_data_iDREM_pro_BTC.xlsx is the test data for the extended model (PDL1, TMB and MSI status data are added).
  5. Since dynamic trajectory calculation and prediction require a certain amount of computing power, if your data is large, you can contact me to obtain the source code to run locally.
  6. This project can only be used for scientific research purposes.

Shiny quick application can apply the following URLs

http://xiyoucloud.pro:20229/

English version video instructions see Youtube link

https://www.youtube.com/watch?v=hcdZKoZsCfE

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Materials of the project iDREM-BTC(Individualized Dynamic Prognostic Model for Immuno-chemotherapy in Advanced Biliary Tract Cancer)

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