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Bump the requirements group with 4 updates #2983

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Updates the requirements on numcodecs, ipywidgets, numcodecs[msgpack] and pymongo to permit the latest version.
Updates numcodecs from 0.15.1 to 0.16.0

Release notes

Sourced from numcodecs's releases.

v0.16.0

What's Changed

New Contributors

Full Changelog: zarr-developers/numcodecs@v0.15.1...v0.16.0

Changelog

Sourced from numcodecs's changelog.

0.16.0

Enhancements


* Add ``typesize`` argument to ``Blosc`` to allow for buffers that are passed to ``encode``
  use that information.  zarr v3 currently has its Blosc codec as bytes-to-bytes but does retain
  the size information so using it here allows for massive compression ratio gains.
  By :user:`Ilan Gold <ilan-gold>`
* Add support for the Linux aarch64 architecture,
  By :user:`Agriya Khetarpal <agriyakhetarpal>`, :issue:`288`.
* Preallocate output buffers and resize directly as needed.
  By :user:`John Kirkham <jakirkham>`, :issue:`656`
* ``Checksum32`` is now an abstract base clase, with ``checksum()`` as an abstract method.
  This helps ensure that any subclasses implement the ``checksum()`` method.
  :issue:`711`

Removals



The following ``blosc`` funcitons are removed, with no replacement.
This is because they were not intended to be public API.

    

  • numcodecs.blosc.init
    • 

  • numcodecs.blosc.destroy
    • 

  • numcodecs.blosc.compname_to_compcode
    • 

  • numcodecs.blosc.cbuffer_sizes
    • 

  • numcodecs.blosc.cbuffer_metainfo
    • 



In addition, numcodecs.blosc.decompress_partial is removed as

has always been experimental and there is no equivalent in the official

blsoc Python package.

By :user:David Stansby &amp;lt;dstansby&amp;gt;, :issue:712


Maintenance




    

  • Replace internal Buffer usage with memoryview\ s.
    
By :user:John Kirkham &lt;jakirkham&gt;, :issue:656
    • 

  • Bump the minimum macOS deployment target for x86_64 to 10.13.
    
By :user:Agriya Khetarpal &lt;agriyakhetarpal&gt;, :issue:288.
Commits
  • 197a03d Update changelog for 0.16 (#720)
  • b588f0f Remove deprecated blosc code (#712)
  • 725cf25 Make Checksum32 an ABC (#711)
  • 56abf3a Define a footer length for fletcher32 (#718)
  • 27aeda2 Switch Buffers to memoryviews & remove extra copies/allocations (#656)
  • 3c933cf (feat): typesize declared with constructor for Blosc (#713)
  • 8168e15 Bump pypa/cibuildwheel from 2.22.0 to 2.23.0 (#714)
  • 33eb139 chore: update pre-commit hooks (#715)
  • 0417d64 Bump conda-incubator/setup-miniconda from 3.1.0 to 3.1.1 (#695)
  • 0ad21f7 Build for Linux AArch64 and other miscellaneous cleanups (#710)
  • Additional commits viewable in compare view

Updates ipywidgets from 8.1.5 to 8.1.6

Release notes

Sourced from ipywidgets's releases.

8.1.6

What's Changed

New Contributors

Full Changelog: jupyter-widgets/ipywidgets@8.1.5...8.1.6

Commits

Updates numcodecs[msgpack] to 0.16.0

Release notes

Sourced from numcodecs[msgpack]'s releases.

v0.16.0

What's Changed

New Contributors

Full Changelog: zarr-developers/numcodecs@v0.15.1...v0.16.0

Changelog

Sourced from numcodecs[msgpack]'s changelog.

0.16.0

Enhancements


* Add ``typesize`` argument to ``Blosc`` to allow for buffers that are passed to ``encode``
  use that information.  zarr v3 currently has its Blosc codec as bytes-to-bytes but does retain
  the size information so using it here allows for massive compression ratio gains.
  By :user:`Ilan Gold <ilan-gold>`
* Add support for the Linux aarch64 architecture,
  By :user:`Agriya Khetarpal <agriyakhetarpal>`, :issue:`288`.
* Preallocate output buffers and resize directly as needed.
  By :user:`John Kirkham <jakirkham>`, :issue:`656`
* ``Checksum32`` is now an abstract base clase, with ``checksum()`` as an abstract method.
  This helps ensure that any subclasses implement the ``checksum()`` method.
  :issue:`711`

Removals



The following ``blosc`` funcitons are removed, with no replacement.
This is because they were not intended to be public API.

    

  • numcodecs.blosc.init
    • 

  • numcodecs.blosc.destroy
    • 

  • numcodecs.blosc.compname_to_compcode
    • 

  • numcodecs.blosc.cbuffer_sizes
    • 

  • numcodecs.blosc.cbuffer_metainfo
    • 



In addition, numcodecs.blosc.decompress_partial is removed as

has always been experimental and there is no equivalent in the official

blsoc Python package.

By :user:David Stansby &amp;lt;dstansby&amp;gt;, :issue:712


Maintenance




    

  • Replace internal Buffer usage with memoryview\ s.
By :user:John Kirkham &lt;jakirkham&gt;, :issue:656
    • 

  • Bump the minimum macOS deployment target for x86_64 to 10.13.
By :user:Agriya Khetarpal &lt;agriyakhetarpal&gt;, :issue:288.
    • 



0.15.1


Improvements

  • Raise a custom UnknownCodecError when trying to retrieve an unavailable codec. By :user:Cas Wognum <cwognum>.

... (truncated)

Commits
  • 197a03d Update changelog for 0.16 (#720)
  • b588f0f Remove deprecated blosc code (#712)
  • 725cf25 Make Checksum32 an ABC (#711)
  • 56abf3a Define a footer length for fletcher32 (#718)
  • 27aeda2 Switch Buffers to memoryviews & remove extra copies/allocations (#656)
  • 3c933cf (feat): typesize declared with constructor for Blosc (#713)
  • 8168e15 Bump pypa/cibuildwheel from 2.22.0 to 2.23.0 (#714)
  • 33eb139 chore: update pre-commit hooks (#715)
  • 0417d64 Bump conda-incubator/setup-miniconda from 3.1.0 to 3.1.1 (#695)
  • 0ad21f7 Build for Linux AArch64 and other miscellaneous cleanups (#710)
  • Additional commits viewable in compare view

Updates pymongo from 4.11.3 to 4.12.0

Release notes

Sourced from pymongo's releases.

PyMongo 4.12.0

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-12-released/318187

Changelog

Sourced from pymongo's changelog.

Changes in Version 4.12.0 (2025/04/08)

.. warning:: Driver support for MongoDB 4.0 reached end of life in April 2025. PyMongo 4.12 will be the last release to support MongoDB 4.0.

PyMongo 4.12 brings a number of changes including:

  • Support for configuring DEK cache lifetime via the key_expiration_ms argument to :class:~pymongo.encryption_options.AutoEncryptionOpts.
  • Support for $lookup in CSFLE and QE supported on MongoDB 8.1+.
  • pymongocrypt>=1.13 is now required for :ref:In-Use Encryption support.
  • Added :meth:gridfs.asynchronous.grid_file.AsyncGridFSBucket.rename_by_name and :meth:gridfs.grid_file.GridFSBucket.rename_by_name for more performant renaming of a file with multiple revisions.
  • Added :meth:gridfs.asynchronous.grid_file.AsyncGridFSBucket.delete_by_name and :meth:gridfs.grid_file.GridFSBucket.delete_by_name for more performant deletion of a file with multiple revisions.
  • AsyncMongoClient no longer performs DNS resolution for "mongodb+srv://" connection strings on creation. To avoid blocking the asyncio loop, the resolution is now deferred until the client is first connected.
  • Added index hinting support to the :meth:~pymongo.asynchronous.collection.AsyncCollection.distinct and :meth:~pymongo.collection.Collection.distinct commands.
  • Deprecated the hedge parameter for :class:~pymongo.read_preferences.PrimaryPreferred, :class:~pymongo.read_preferences.Secondary, :class:~pymongo.read_preferences.SecondaryPreferred, :class:~pymongo.read_preferences.Nearest. Support for hedge will be removed in PyMongo 5.0.
  • Removed PyOpenSSL support from the asynchronous API due to limitations of the CPython asyncio.Protocol SSL implementation.
  • Allow valid SRV hostnames with less than 3 parts.

Issues Resolved ...............

See the PyMongo 4.12 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.12 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=41916

Changes in Version 4.11.2 (2025/03/05)

Version 4.11.2 is a bug fix release.

  • Fixed a bug where :meth:~pymongo.database.Database.command would fail when attempting to run the bulkWrite command.

Issues Resolved ...............

See the PyMongo 4.11.2 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.11.2 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=42506

... (truncated)

Commits
  • 98b656f BUMP 4.12.0
  • 92970d3 PYTHON-5248 Update changelog for 4.12 release (#2265)
  • 4d4a26c PYTHON-5270 Server selection should log remainingTimeMS as milliseconds (#2263)
  • 7a4218f PYTHON-5263 Convert s3-related functions to generated config (#2259)
  • 79e5d60 PYTHON-5268 Fix handling of PYTHON_BINARY (#2264)
  • bf0aa56 PYTHON-5252 Add dependency on pymongocrypt 1.13 (#2258)
  • 708ce16 PYTHON-4724 - Prohibit AsyncMongoClient from being used across multiple event...
  • 1c813dc PYTHON-4575 Allow valid SRV hostnames with less than 3 parts (#2234)
  • e7c0814 PYTHON-4557 - Fix write log messages for retried commands (#2260)
  • b402239 PYTHON-5219 - Avoid awaiting coroutines when holding locks (#2250)
  • Additional commits viewable in compare view

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@dependabot
Bump the requirements group with 4 updates
ac93167 
Updates the requirements on [numcodecs](https://github.com/zarr-developers/numcodecs), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets), [numcodecs[msgpack]](https://github.com/zarr-developers/numcodecs) and [pymongo](https://github.com/mongodb/mongo-python-driver) to permit the latest version.

Updates `numcodecs` from 0.15.1 to 0.16.0
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.15.1...v0.16.0)

Updates `ipywidgets` from 8.1.5 to 8.1.6
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.5...8.1.6)

Updates `numcodecs[msgpack]` to 0.16.0
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.0.0...v0.16.0)

Updates `pymongo` from 4.11.3 to 4.12.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.11.3...4.12.0)

---
updated-dependencies:
- dependency-name: numcodecs
  dependency-version: 0.16.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
- dependency-name: ipywidgets
  dependency-version: 8.1.6
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: numcodecs[msgpack]
  dependency-version: 0.16.0
  dependency-type: direct:production
  dependency-group: requirements
- dependency-name: pymongo
  dependency-version: 4.12.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Apr 14, 2025
@dstansby
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@dependabot ignore numcodecs

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dependabot bot commented on behalf of github Apr 16, 2025

OK, I won't notify you about numcodecs again, unless you unignore it.

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dependabot bot commented on behalf of github Apr 16, 2025

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Apr 16, 2025
@dependabot dependabot bot deleted the dependabot/pip/support/v2/requirements-3893698dbe branch April 16, 2025 13:25
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