try using conda to configure CI env #44

	name: Build SurfATT

	on:
	push:
	branches: [ "devel", "devsj"]
	pull_request:
	branches: [ "main" ]

	jobs:
	LinuxTest:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	# Setup Miniconda
	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: "3.10"
	use-mamba: true

	# Create and activate Conda environment with required dependencies
	- name: Create conda environment
	shell: bash -l {0}
	run: \|
	conda create -n surfatt -c conda-forge openmpi cxx-compiler fortran-compiler cmake hdf5 -y
	conda activate surfatt

	# Build SurfATT inside conda environment
	- name: Build SurfATT
	shell: bash -l {0}
	run: \|
	mkdir build && cd build
	cmake .. && make -j4

	# Run example test with MPI and HDF5
	- name: Test
	shell: bash -l {0}
	run: \|
	conda activate surfatt
	cd $GITHUB_WORKSPACE/examples/00_checkerboard_iso
	sed -i '/^NPROC=/c\NPROC=1' run_this_example.sh
	sed -i '/^ niter:/c\ niter: 2' input_params.yml
	bash run_this_example.sh

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