Proteomics comparison of HepG2 cells grown in antibiotic (PenStrep) v. non-antibiotic containing media. Please see corresponding publication for all experimental and data details.
All data required to run these notebooks can be found in the Data folder on this repo.
The analyses are divided into the following Jupyter notebooks, and should be run sequentially if recreating any analyses/figures.
- Data import and cleaning
- Clustering
- T-tests
- Linear mixed effect models
- Gene ontology
- Literature comparison
Requirements: see environment.yml