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@wtsi-hpag

wtsi-hpag

Software tools and pipelines developed by the High Performance Algorithms Group @ the Wellcome Sanger Institute

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  1. scanPAV scanPAV Public

    Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

    C 29 7

  2. Scaff10X Scaff10X Public

    Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

    C 22 3

  3. scaffHiC scaffHiC Public

    Pipeline for genome scaffolding by modelling distributions of HiC pairs

    C 9 1

  4. xAIWorkshop xAIWorkshop Public

    A Repository of Notebooks, Revision notes and Presentation tools for the Explainable AI in Biology Conference in October 2024.

    TeX 7 2

  5. Kmeres Kmeres Public

    Kmeres - Identification of Centromeres and Telomeres using Kmer Profiles

    C 7

  6. caus caus Public

    CAUS is a pipeline for Chromosome Assignment Using Synteny

    C 5

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