Skip to content

rliger Release v2.2.0

Latest
Compare
Choose a tag to compare
@mvfki mvfki released this 04 May 20:48
  • Implemented highly efficient on-disk iNMF that scales to a million cells using
    slightly more time than in-memory version, requiring only laptop-level memory.
  • Added 10X H5 data and H5AD loading function that loads the data into regular dgCMatrix
    in memory or the DelayedArray representation backed on disk, the latter is used
    for on-disk iNMF implementation.
  • Added selectBatchHVG() which implements another HVG selection strategy, credit to SCIB
  • Adding suggestK() back with new methodology
  • Clarified optimal runGOEnrich() workflow and added fold enrichment metric in
    the returned result
  • Fixed important bug in online iNMF scenario 2
  • Fixed multiple problems related to ATAC analysis
    • Fixed Wilcoxon rank-sum test bug when using ATAC peak counts
    • Fixed gene coordinate parsing bug from BED file
    • Optimized peak parsing speed