Custom code associated with the publication:
- Wlodzimierz P,* Rabanal FA,* Burns R,* Naish M, Primetis E, Scott A, Mandáková T, Gorringe N, Tock AJ, Holland D, Fritschi K, Habring A, Lanz C, Patel C, Schlegel T, Collenberg M, Mielke M, Nordborg M, Roux F, Shirsekar G, Alonso-Blanco C, Lysak MA, Novikova P, Bousios A, Weigel D, Henderson IR. (2023) Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature. DOI: 10.1038/s41586-023-06062-z *Contributed equally.
In addition to this repository,
- the TRASH algorithm is available at https://github.com/vlothec/TRASH
- the ATHILAfinder algorithm is available at https://github.com/eliasprim/ATHILAfinder