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1. nl-rna-seq_wf nl-rna-seq_wf Public

   RNA-seq for rare diseases pipeline using nextflow

   Nextflow 1

2. wgs_qc_wf wgs_qc_wf Public

   Workflow used to check QC for WGS data

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3. ExpansionHunter ExpansionHunter Public

   Forked from Illumina/ExpansionHunter

   A tool for estimating repeat sizes

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4. pipeline-align-DNA pipeline-align-DNA Public

   Forked from uclahs-cds/pipeline-align-DNA

   Nextflow pipeline to align paired DNA FASTQs and sort, mark duplicates, and index resulting alignment

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5. pipeline-recalibrate-BAM pipeline-recalibrate-BAM Public

   Forked from uclahs-cds/pipeline-recalibrate-BAM

   Nextflow pipeline to perform Indel Realignment and Base Quality Score Recalibration

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6. pipeline-call-gSNP pipeline-call-gSNP Public

   Forked from uclahs-cds/pipeline-call-gSNP

   Nextflow pipeline to call germline short variants using GATK

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