Complete automation pipeline for multiple SRRXXXXXXXX folders (each containing *.sra files) to raw count *.csv using packages available in Conda.
This pipeline uses following packages:
- fastqc
- multiqc
- fastp
- star
- samtools
- subread
-
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tunabirgun/paired_end_sra_to_raw_count_table
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[VALID FOR PAIRED-END READS] Complete automation pipeline for multiple SRRXXXXXXXX folders (each containing *.sra files) to raw count *.csv using packages available in Conda.
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