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Error "ValueError: total_log_likelihood decreased from prior iteration" for some datasets

Status: Open.

#90 In treangenlab/emu;

· samuell opened on Oct 14, 2025

Has anyone experimented with number of minimap2 secondary alignments (--N flag)?

Status: Open.

#89 In treangenlab/emu;

· samuell opened on Oct 9, 2025

Incorrect output when using --output-unclassified on gzipped FASTQ input

Status: Open.

#88 In treangenlab/emu;

· AdmiralenOla opened on Oct 8, 2025

Add trana pipeline to README

Status: Open.

#87 In treangenlab/emu;

· ryanjameskennedy opened on Sep 18, 2025

What does "Emu" stand for?

Status: Open.

#86 In treangenlab/emu;

· sachiwije opened on Aug 26, 2025

Bacterial Functional Annotation using EMU Output

Status: Open.

#84 In treangenlab/emu;

· Anon1382 opened on Aug 8, 2025

Concatenamer Removal Before EMU Classification with Nanopore 16S rRNA Data

Status: Open.

#82 In treangenlab/emu;

· ctmlab4 opened on Jul 26, 2025

No Proteobacteria reads in human stool sample by emu

Status: Open.

#79 In treangenlab/emu;

· jyo-12345 opened on Jul 21, 2025

incorrect hits with bad alignment still gives "1.0" read assignment probability

Status: Open.

#74 In treangenlab/emu;

· Robvh-git opened on Jun 4, 2025

Any update for the default database

Status: Open.

#72 In treangenlab/emu;

· ZhangDengwei opened on May 16, 2025

Are Unmapped reads unkown taxa?

Status: Open.

#71 In treangenlab/emu;

· micrrwd opened on May 15, 2025

empty combined table with emu combine

Status: Open.

#69 In treangenlab/emu;

· ids-willemsen opened on Apr 14, 2025