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vizgen
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A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
cell-segmentation watershed-algorithm single-cell-rna-seq spatial-transcriptomics merfish cellpose vizgen vizgen-postprocessing
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Nov 22, 2023 - Python
Efficiently parse the transcripts metadata from the detected_transcripts.csv file generated by Vizgen MERFISH pipeline.
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Updated
Jun 3, 2025 - Rust
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