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slide-seq

Here are 2 public repositories matching this topic...

mehdiborji / nanoranger

simplified cellranger for long-read data

linux bioinformatics python3 bioinformatics-pipeline pacbio computational-science 10x-genomics vdj-recombination tcr-repertoire single-cell-rna-seq minimap2 spatial-transcriptomics sc-rna-seq computational-genomics mixcr cellranger slide-seq tcr-seq nanoranger

Updated Aug 27, 2025
Python

tudaga / interactive_gene_plots

Interactive visualization of marker genes and clustering in Slide-seq and single cell RNAseq data.

clustering marker-genes cerebellum slide-seq

Updated May 11, 2020
Jupyter Notebook

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