Python toolkit for 2D/3D image processing using CPU or GPU
Python toolkit for 2D single-particle tracking (SPT) and reconstruction of super-resolution images.
SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.
Statistical analysis of single molecule trajectories. (NB: The Sojourner.Pro featuring machine learning analysis is in the making, sign up on sojourner website for release: also, I am open for freelancing till the end of the pandemic, checkout the website for details).
Legacy MATLAB code from PhD dissertation work and academic postdoc work
MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.
Software for automated analysis of single molecule fluorescence and FRET (smFRET) data
A GUI application to assist manual object tracking in 2D/3D time-lapse images
Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.
A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.
Jupyter implementations of various features in the `misloc_package`, predicting mispolarization and mislocalization in plasmon-enhanced single-molecule imaging.
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
Colocalization metrics and distances for images or their sparse representations.
Bei Liu's personal website
All this is part of my Projektarbeit (student project) @ TU Wien 2021
Python algorithms to convert images of beads into positions
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