Notebooks used in scvi-tools tutorials
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Jun 17, 2025 - Jupyter Notebook
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scvi-tools
Here are 10 public repositories matching this topic...
Template repository for creating novel models with scvi-tools
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Jan 18, 2023 - Python
Deep Learning Based Models for Preimplantation Mouse and Human Development
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Jan 17, 2025 - Jupyter Notebook
Sobolev alignment of deep probabilistic models for comparing single cell profiles
python deep-learning clinical gene-expression cancer-genomics scrna-seq single-cell variational-autoencoder cell-lines scanpy pre-clinical kernel-machine-learning drug-response scvi-tools
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Jun 9, 2025 - Python
Variational Inference for Cell Type Evolution
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May 6, 2025 - Python
scRNA Analysis tutorials
python bioinformatics r tutorials bioinformatics-pipeline transcriptomics bioinformatics-analysis single-cell-rna-seq seurat bulk-rna-seq scanpy scvi-tools
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Jan 23, 2023 - HTML
Single-cell RNA-seq analysis of mouse gastrulation using data from Argelaguet and Pijuan-Sala. The project includes preprocessing, SCVI-based dataset integration, differential gene expression analysis, and a no-code interface powered by Chatmol for natural language interaction with the pipeline.
python bioinformatics deep-learning gpu-acceleration dimensionality-reduction scrna-seq data-integration llama single-cell differential-expression umap developmental-biology no-code embryogenesis scanpy gastrulation anndata scvi-tools mouse-development
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Jun 1, 2025 - Jupyter Notebook
Material for Bioconductor 2023 workshop on interoperation with python
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Jul 29, 2023 - R
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