Curated Metagenomic Data of the Human Microbiome

R implementation of the LEfSe method

Analyses in R and Python Using curatedMetagenomicData

Sample Metadata Curation for curatedMetagenomicData

For documenting issues related to BugSigDB curation.

A workshop on microbiome analysis using Bioconductor

16S rRNA Sequencing Data from the Human Microbiome Project

Curated Metagenomics Data Nextflow workflows

A microbial signatures database

Harmonized annotation of microbial physiology

R-side access to published microbial signatures from BugSigDB

Simple exploratory analysis of curated microbe signatures

A Command-Line Interface for curatedMetagenomicData

BugSigDB data files

Benchmarking examples of lefser against LEfSe and microbiomeMarker

BugSigDB Stats and Analysis

The Preprocessing Pipeline for curatedMetagenomicData

Preparation of datasets for MicrobiomeBenchmarkData

Genestack's Open Data Management (ODM) setup for curatedMetagenomicData curation