A Python package that aims to characterise the dynamics of local chemical environments from Molecular Dynamics trajectories of proteins and other biomolecules. Public mirror of https://gitlab.jsc.fz-juelich.de/slbio/speadi.
Topological data analytic approach for discovering biophysical signatures in protein dynamics
Superposition-based Protein Embedded CA SC score
protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware data splitting to prevent sequence similarity bias in model evaluation, along with comprehensive protein embedding capabilities for feature generation.
🧬 AI-powered protein structure-function analysis tool with 8-state secondary structure prediction, functional region identification, and interactive visualization. Built for researchers, educators, and students to understand how protein structure drives biological function.
🧬Protein Functions Prediction through Amino Acids Sequences🧬
A Python tool to compute physicochemical properties of proteins from FASTA files. Supports molecular weight, isoelectric point (pI), instability index, aliphatic index, and GRAVY score using Biopython.
A full-stack bioinformatics website for searching, aligning, and visualising protein sequences by taxon.
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