Machine-learning-based general bacterial promoter prediction tool.
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Jun 19, 2023 - C
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promoter-sequences
Here are 4 public repositories matching this topic...
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
python api transcription-factors python3 dna ncbi dna-sequences jaspar transcription-factor webtools iupac transcription-factor-binding-site streamlit promoter-sequences responsive-elements terminator-sequences
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Jun 4, 2025 - Python
Machine learning pipeline for predicting gene expression levels from DNA promoter sequences using k-mer features and ensemble methods. Built with scikit-learn, includes comprehensive evaluation and visualization tools.
python data-science machine-learning bioinformatics research genomics random-forest scikit-learn machine-learning-algorithms computational-biology gene-expression datascience classification feature-engineering sequence-analysis biotech visulaization ml-pipeline dna-analysis promoter-sequences
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Jul 8, 2025
Some python programs to extract data from .gbk (GenBank) files
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Jul 13, 2024 - Python
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