iFISH Probe Design: a Python3 package to build iFISH probes.
Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
ifpd2: a Python3.7+ package to build iFISH probes
Oligonucleotide Calculator
An open-source platform for managing DNA synthesis processes.
Software suite for oligonucleotide native MS data treatment
Tool for generating optimized nucleic acid biosensor sequences
Custom routes, pages and files for iFISH4U website.
RNAtox is a code to classify the caspase toxicity and gene knockdown of antisense oligonucleotide (ASO) sequences and generate explanations of k-mers that cause caspase toxicity and gene knockdown using Local Interpretable Model-Agnostic Explanations (LIME), Anchors explanations, and SHapley Additive exPlanations (SHAP).
This software is used to automate workflow. It is used to compose a working protocol and calculate reagent for oligonucleotide synthesis.
A simplistic Shiny app for observing mutation data.
A lightweight wrapper for sending requests to the Oligowizard API. Includes examples for authentication, queries, and result parsing.
A tool for RNA mass spectrometry
K-Mer management tools
⛓️ Automating construction of oligo library sequences for oligo array synthesis.
Reference genome annotation file processing toolset
☣️ Convert Oligonucleotides to Literal DNA Strand Sequences
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