Genome size estimation from long read overlaps
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Oct 27, 2025 - Rust
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genome-size
Here are 8 public repositories matching this topic...
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix and suffix) etc
bioinformatics genome rename-files contigs genome-size extract-sequences bioinformatics-tool fasta-files genomeassembly renamecontigs extractcontigs assemblystatistics
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Oct 21, 2025 - Shell
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
bioinformatics genome-size polyploidy kmers k-mers k-mer-spectrum allotetraploidy tetmer ploidy-inference
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Aug 14, 2024 - R
Python objects for dealing with metric units and memory, file, and genome sizes 💾
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Mar 20, 2024 - Python
Shiny app that plots NCBI genomes size versus protein count
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Oct 15, 2018 - R
Investigating genome size variation with k-mers
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Jul 12, 2022 - R
Sup. Table 1 from Rodríguez-Gijón and Nuy et al., 2022 (Front. in Microbiology)
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Apr 13, 2023
Modelling evolution of genome size in prokaryotes in response to changes in their abiotic environment
genome cpp simulation biology evolution modelling bacteria evolution-simulation genome-size prokaryotes genome-size-evolution
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Sep 8, 2017 - Python
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