This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
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Updated
Apr 1, 2025
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annotation-pipeline
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dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
bioinformatics pipeline genomics assembly annotations trinity transposable-elements repeatmasker annotation-pipeline
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Mar 29, 2023 - Dockerfile
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