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README.rst

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.. |Docs| image:: https://readthedocs.com/projects/diffxpy/badge/?version=latest
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:target: https://diffxpy.readthedocs.io
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# Fast and scalable differential expression analysis on single-cell RNA-seq data
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Fast and scalable differential expression analysis on single-cell RNA-seq data
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===
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diffxpy covers a wide range of differential expression analysis scenarios encountered in single-cell RNA-seq scenarios
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and integrates into scanpy_ workflows.
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Import diffxpy as `import diffxpy.api as de` to access the following differential expression analysis-related tools:
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1. *differential expression analysis* in the module `de.test.*`
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2. *gene set enrichment analysis* based on differential expression calls in the module `de.enrich.*`
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1. _differential expression analysis_ in the module `de.test.*`
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2. _gene set enrichment analysis_ based on differential expression calls in the module `de.enrich.*`
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Refer to the documentation_ and the tutorials_ for details of these modules.
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