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BioC: sample file.xml

jmcejuela edited this page Dec 8, 2014 · 4 revisions
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE collection SYSTEM "BioC.dtd">
<collection>
    <source>jmcejuela/IDP4</source>
    <date>2014-12-08T13:59Z</date>
    <key>jmcejuela@IDP4.key</key>
    <document>
        <id>a61jhpfbovju2u65CMdpWwPf8edq-PMC3238392.ann.json</id>
        <infon key="ORIG">PMC3238392</infon>
        <infon key="anncomplete">false</infon>
        <infon key="annotatableParts">s1h1,s2h1,s2p1,s3h1,s3p1,s3p2,s10h1,s10p1,s10p2,s10p3</infon>
        <passage>
            <infon key="id">s1h1</infon>
            <offset>0</offset>
        </passage>
        <passage>
            <infon key="id">s2h1</infon>
            <offset>0</offset>
        </passage>
        <passage>
            <infon key="id">s2p1</infon>
            <offset>0</offset>
            <annotation id="s2p1|471,475">
                <infon key="prob">0.5228</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0003731</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="471" length="4"/>
                <text>EGFR</text>
            </annotation>
            <annotation id="s2p1|708,715">
                <infon key="prob">0.9993</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="708" length="7"/>
                <text>SOCS36E</text>
            </annotation>
            <annotation id="s2p1|790,797">
                <infon key="prob">0.9983</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0033266</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="790" length="7"/>
                <text>SOCS44A</text>
            </annotation>
            <annotation id="s2p1|802,809">
                <infon key="prob">0.9998</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="802" length="7"/>
                <text>SOCS36E</text>
            </annotation>
        </passage>
        <passage>
            <infon key="id">s3h1</infon>
            <offset>0</offset>
        </passage>
        <passage>
            <infon key="id">s3p1</infon>
            <offset>0</offset>
            <annotation id="s3p1|1943,1951">
                <infon key="prob">0.7169</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0039632</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="1943" length="8"/>
                <text>Cullin 5</text>
            </annotation>
            <annotation id="s3p1|1956,1959">
                <infon key="prob">0.5556</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0044020</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="1956" length="3"/>
                <text>Roc</text>
            </annotation>
        </passage>
        <passage>
            <infon key="id">s3p2</infon>
            <offset>0</offset>
        </passage>
        <passage>
            <infon key="id">s10h1</infon>
            <offset>0</offset>
        </passage>
        <passage>
            <infon key="id">s10p1</infon>
            <offset>0</offset>
        </passage>
        <passage>
            <infon key="id">s10p2</infon>
            <offset>0</offset>
            <annotation id="s10p2|61,68">
                <infon key="prob">0.9997</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="61" length="7"/>
                <text>SOCS36E</text>
            </annotation>
            <annotation id="s10p2|73,80">
                <infon key="prob">0.9964</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0033266</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="73" length="7"/>
                <text>SOCS44A</text>
            </annotation>
            <annotation id="s10p2|242,249">
                <infon key="prob">0.9992</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="242" length="7"/>
                <text>SOCS36E</text>
            </annotation>
            <annotation id="s10p2|471,478">
                <infon key="prob">0.9995</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="471" length="7"/>
                <text>SOCS36E</text>
            </annotation>
            <annotation id="s10p2|662,669">
                <infon key="prob">0.9995</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="662" length="7"/>
                <text>SOCS36E</text>
            </annotation>
            <annotation id="s10p2|872,879">
                <infon key="prob">0.9998</infon>
                <infon key="classId">e_1</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="872" length="7"/>
                <text>SOCS36E</text>
            </annotation>
        </passage>
        <passage>
            <infon key="id">s10p3</infon>
            <offset>0</offset>
            <annotation id="s10p3|0,7">
                <infon key="prob">0.9947</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0033266</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="0" length="7"/>
                <text>SOCS44A</text>
            </annotation>
            <annotation id="s10p3|284,291">
                <infon key="prob">0.9938</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0033266</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="284" length="7"/>
                <text>SOCS44A</text>
            </annotation>
            <annotation id="s10p3|312,319">
                <infon key="prob">0.9997</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0033266</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="312" length="7"/>
                <text>SOCS44A</text>
            </annotation>
            <annotation id="s10p3|331,338">
                <infon key="prob">0.9991</infon>
                <infon key="classId">e_1</infon>
                <infon key="n_3">FBgn0030869</infon>
                <infon key="state"/>
                <infon key="who">ml:peker</infon>
                <location offset="331" length="7"/>
                <text>SOCS16D</text>
            </annotation>
        </passage>
    </document>
</collection>
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