G3SA: A GPU-accelerated Gold-standard Genomics Library for End-to-end Sequence Alignment (ACM ICS 2025)
This repository is currently undergoing a major update. It is strongly recommended to revisit this repository after a new release is made.
G3SA can be used in the same manner as the CPU baselines (Minimap2, BWA-MEM2). Few options may be unavailable.
Fastq and fasta files can be downloaded from various sources such as GenBank or projects such as Genome in a Bottle.