QFeaturesGUI

QFeaturesGUI is a R package that contains a suite of shiny app to offer a graphical interface for the QFeatures package. Currently the package can be used to convert tables (csv and tsv) into a QFeatures object. This works for both bulk and single-cell data. The user can also apply several pre-processing steps to the imported QFeatures. This process is performed with the readQFeatures function from the QFeatures package.

Installation

Get the remotes packages to install from GitHub

# Check if remotes is installed. Otherwise install it.
if (!require("remotes", quietly = TRUE)){
    install.packages("remotes")
}

Install the QFeaturesGUI package from the statOmics branch. For the EBI course, this is what you should run!

remotes::install_github("statOmics/QFeaturesGUI",
    build_manual = TRUE,
    build_vignettes = TRUE
)

Load the package.

library(QFeaturesGUI)