This component is run given a sample id already added into the bifrostDB. From this it'll pull the paired_reads and preform assembly of the data and remapping of the raw reads to the assembly. From the resulting files various QC metrics will be captured.
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Bifrost Component: CGE MLST - Runs kma on a mlst DB using paired reads
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ssi-dk/bifrost_cge_mlst
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Bifrost Component: CGE MLST - Runs kma on a mlst DB using paired reads
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