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Tables is a python-based sourmash plugin to convert the standard output files from base sourmash into an OTU format. See README for more information.

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tables

Tables! We all love them and couldn't function without them in our daily lives. Now sourmash has tables too!

Installation

pip install sourmash_plugin_tables

Usage

Support

We suggest filing issues in the main sourmash issue tracker as that receives more attention!

Dev docs

tables was developed from https://github.com/sourmash-bio/sourmash_plugin_template.

Testing

Run:

pytest tests

Example/test data located in tests/test-data (shocking, I know)

Generating a release

Bump version number in pyproject.toml and push.

Make a new release on github.

Then pull, and:

make dist

followed by twine upload dist/....

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Tables is a python-based sourmash plugin to convert the standard output files from base sourmash into an OTU format. See README for more information.

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