dna-seq-benchmark v1.12.2

Bug Fixes

• add dirs with results to rule all (#120) (4dfdf6d)

dna-seq-benchmark v1.12.1

Bug Fixes

• add .get() for optional values in config instead of dict access (#118) (94d9294)

dna-seq-benchmark v1.12.0

Features

• Add heatmap coloring for coverage stratification in fp fn report, hide class label. (#112) (e0d3ea9)
• automate picking of rename file based on reference genome used for calling + setup for more than 2 reference genomes (#113) (2bbb9ae)
• Report FP / FN negative variants in single table (#107) (0464700)
• add rule merge_callsets for snv/indel callsets (#115) (7e5fdde)

Bug Fixes

• catch when FORMAT field is present in truth (#114) (0e8e4be)
• change vaf_field to dict (#110) (e78abbb)
• fix missing index as input for restrict_to_reference_contigs (#102) (c55c503)
• link to truth vcf for na12878-somatic (#116) (724ce2d)

Performance Improvements

• update datavzrd wrapper (#104) (db68793)

dna-seq-benchmark v1.11.7

Bug Fixes

• Only append labels in first iteration of storage loop; calculate chi2 only on non empty feature matrix. (#96) (20a469a)
• restrict calls to reference contigs (#101) (0413580)

dna-seq-benchmark v1.11.6

Bug Fixes

• hide sort_index in results table (#94) (bb72674)

dna-seq-benchmark v1.11.5

Performance Improvements

• update to latest datvzrd (2ae57cc)

dna-seq-benchmark v1.11.4

Bug Fixes

• update to latest datavzrd wrappers (ba6b039)

dna-seq-benchmark v1.11.3

Bug Fixes

• fix f* calculation (#89) (1afb621)
• Split intersection with target region and normalize calls in separate rules. (#90) (795a82b)

dna-seq-benchmark v1.11.2

Performance Improvements

• update to latest datavzrd (includes sorting and column hiding) (#87) (182edbb)

dna-seq-benchmark v1.11.1

Bug Fixes

• fix F* calculation (#85) (e684a33)