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snakemake-workflows / dna-seq-benchmark Public

generated from snakemake-workflows/snakemake-workflow-template

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feat: improve coverage stratification for datasets with high coverage#75

Merged

johanneskoester merged 8 commits intomainsnakemake-workflows/dna-seq-benchmark:mainfrom

feat/improve-coverage-stratificationsnakemake-workflows/dna-seq-benchmark:feat/improve-coverage-stratificationCopy head branch name to clipboard

Jun 11, 2024

Conversation Commits8 (8)Checks Files changed

Merged

feat: improve coverage stratification for datasets with high coverage#75
johanneskoester merged 8 commits intomainfrom
feat/improve-coverage-stratification

Commits

Commits on May 31, 2024

feat: Add new parameter for benchmarks with high coverage
BiancaStoecker
committed
feat: Add coverages dict for high coverages, get_coverages function and change occurences of old coverages to choose coverage depending on parameter for benchmark.
BiancaStoecker
committed
feat: Add color coded domains for high coverages to report
BiancaStoecker
committed
wip: Expand for checkpoint inputs in rule eval needs to be adapted, currently only works when all benchmarks are high_coverage
BiancaStoecker
committed
fix: fmt
BiancaStoecker
committed

Commits on Jun 3, 2024

fix: rename coverage entries
BiancaStoecker
committed
fix: fix expand in rule eval through split by coverage.
BiancaStoecker
committed
fix: fmt
BiancaStoecker
committed

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