Skip to content

fix: link to snakemake workflow catalog #129

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
May 22, 2025
Merged

fix: link to snakemake workflow catalog #129

merged 1 commit into from
May 22, 2025

Conversation

famosab
Copy link
Collaborator

@famosab famosab commented May 22, 2025

Summary by CodeRabbit

  • Documentation
    • Updated the README to provide the correct link to the usage documentation for the workflow.

Copy link
Contributor

coderabbitai bot commented May 22, 2025

Walkthrough

The README.md file was updated to correct the URL for the workflow's usage documentation, replacing a generic or incorrect link with the accurate page for the "dna-seq-benchmark" workflow in the Snakemake Workflow Catalog. No other content or instructions were modified.

Changes

File(s) Change Summary
README.md Updated the documentation URL to point to the correct "dna-seq-benchmark" workflow documentation.

Poem

In README’s warren, a link went astray,
But now it hops to the right place today.
No more lost bunnies in catalog’s maze—
The dna-seq-benchmark shines in clear rays.
🐇✨

Note

⚡️ AI Code Reviews for VS Code, Cursor, Windsurf

CodeRabbit now has a plugin for VS Code, Cursor and Windsurf. This brings AI code reviews directly in the code editor. Each commit is reviewed immediately, finding bugs before the PR is raised. Seamless context handoff to your AI code agent ensures that you can easily incorporate review feedback.
Learn more here.


Note

⚡️ Faster reviews with caching

CodeRabbit now supports caching for code and dependencies, helping speed up reviews. This means quicker feedback, reduced wait times, and a smoother review experience overall. Cached data is encrypted and stored securely. This feature will be automatically enabled for all accounts on May 30th. To opt out, configure Review - Disable Cache at either the organization or repository level. If you prefer to disable all data retention across your organization, simply turn off the Data Retention setting under your Organization Settings.
Enjoy the performance boost—your workflow just got faster.


📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between b9d4360 and 9140697.

📒 Files selected for processing (1)
  • README.md (1 hunks)
🔇 Additional comments (1)
README.md (1)

12-12: Corrected Snakemake Workflow Catalog link
The updated URL now points directly to the dna-seq-benchmark workflow documentation, improving discoverability and ensuring users land on the right page. I’ve verified the link resolves correctly.


Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Explain this complex logic.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai explain this code block.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and explain its main purpose.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Support

Need help? Create a ticket on our support page for assistance with any issues or questions.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai generate docstrings to generate docstrings for this PR.
  • @coderabbitai generate sequence diagram to generate a sequence diagram of the changes in this PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@BiancaStoecker BiancaStoecker merged commit 1c49f2f into main May 22, 2025
6 checks passed
@BiancaStoecker BiancaStoecker deleted the fix/readme branch May 22, 2025 09:11
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants