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No Domain/Kingdom information in biom file

Status: Open.

#29 In smdabdoub/kraken-biom;

· psal591 opened on Oct 19, 2025

Can you add a new version tag to cite properly?

Status: Open.

#26 In smdabdoub/kraken-biom;

· azmigueldario opened on Aug 17, 2023

Question Regarding Read Assignments in Biom Files

Status: Open.

#25 In smdabdoub/kraken-biom;

· Tonny-zhou opened on Jul 28, 2023

It seems that unclassified reads are ignored

Status: Open.

#24 In smdabdoub/kraken-biom;

· claczny opened on Jul 26, 2023

Include taxonomic levels below species

Status: Open.

#23 In smdabdoub/kraken-biom;

· Pstege opened on Apr 14, 2023

New release needed

Status: Open.

#22 In smdabdoub/kraken-biom;

· bgruening opened on Sep 7, 2022

empty .biom files from normal-looking bracken reports?

Status: Open.

#21 In smdabdoub/kraken-biom;

· mawa86 opened on Jun 21, 2022

Add sample_data info to biom file

Status: Open.

#20 In smdabdoub/kraken-biom;

· Ptero64 opened on Jun 4, 2022

Bracken input error: "biom.exception.TableException: Cannot delimit self if I don't have data..."

Status: Open.

#18 In smdabdoub/kraken-biom;

· trfeuerborn opened on Feb 10, 2022

Errors while using kraken-biom

Status: Open.

#17 In smdabdoub/kraken-biom;

· pdhrati02 opened on Feb 1, 2022

Hi, is there a bracken to biom tool. I have seen this issue requested before but with no conclusion. Thx m

Status: Open.

#16 In smdabdoub/kraken-biom;

· madlam-tech opened on Jan 31, 2022

Updating conda and PyPI

Status: Open.

#15 In smdabdoub/kraken-biom;

· ctanes opened on Dec 1, 2021