Phrag_single_spatial_transcriptomics

This folder contains the scripts used for single cell and spatial transcriptomics analysis of Phragmites australis.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
README.md		README.md
step10.sh		step10.sh
step1_preprocess.sh		step1_preprocess.sh
step2_seuratobj.sh		step2_seuratobj.sh
step3.sh		step3.sh
step4.sh		step4.sh
step4spatial_cluster.sh		step4spatial_cluster.sh
step5_spatial_projection_seurat.sh		step5_spatial_projection_seurat.sh
step6_sc_h5ad.sh		step6_sc_h5ad.sh
step7_spatial_sc_project_Tangram.sh		step7_spatial_sc_project_Tangram.sh
step8_velocity.sh		step8_velocity.sh
step9.sh		step9.sh
step9_bulk_DEG.sh		step9_bulk_DEG.sh

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