fix gedidb-contrib/ci-trigger@v1 action #7
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI Upstream | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| types: [opened, reopened, synchronize, labeled] | |
| schedule: | |
| - cron: "0 0 * * *" # Daily “At 00:00” UTC | |
| workflow_dispatch: # allows you to trigger the workflow run manually | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| FORCE_COLOR: 3 | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect upstream-dev ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'simonbesnard1/gedidb' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: gedidb-contrib/ci-trigger@v1 | |
| id: detect-trigger | |
| with: | |
| keyword: "[test-upstream]" | |
| upstream-dev: | |
| name: upstream-dev | |
| runs-on: ubuntu-latest | |
| needs: detect-ci-trigger | |
| env: | |
| ZARR_V3_EXPERIMENTAL_API: 1 | |
| if: | | |
| always() | |
| && ( | |
| (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| || needs.detect-ci-trigger.outputs.triggered == 'true' | |
| || contains( github.event.pull_request.labels.*.name, 'run-upstream') | |
| ) | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set up conda environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: ci/requirements/environment.yml | |
| environment-name: gedidb-tests | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| pytest-reportlog | |
| - name: Install upstream versions | |
| run: | | |
| bash ci/install-upstream-wheels.sh | |
| - name: Install gedidb | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| python gedidb/utils/print_versions.py | |
| - name: Import gedidb | |
| run: | | |
| python -c 'import gedidb' | |
| - name: Run Tests | |
| if: success() | |
| id: status | |
| run: | | |
| python -m pytest --timeout=60 -rf \ | |
| --report-log output-${{ matrix.python-version }}-log.jsonl | |
| - name: Generate and publish the report | |
| if: | | |
| failure() | |
| && steps.status.outcome == 'failure' | |
| && github.event_name == 'schedule' | |
| && github.repository_owner == 'simonbesnard1' | |
| uses: gedidb-contrib/issue-from-pytest-log@v1 | |
| with: | |
| log-path: output-${{ matrix.python-version }}-log.jsonl | |
| mypy-upstream-dev: | |
| name: mypy-upstream-dev | |
| runs-on: ubuntu-latest | |
| needs: detect-ci-trigger | |
| if: | | |
| always() | |
| && ( | |
| contains( github.event.pull_request.labels.*.name, 'run-upstream') | |
| ) | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set up conda environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: ci/requirements/environment.yml | |
| environment-name: gedidb-tests | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| pytest-reportlog | |
| - name: Install upstream versions | |
| run: | | |
| bash ci/install-upstream-wheels.sh | |
| - name: Install gedidb | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| python gedidb/utils/print_versions.py | |
| - name: Install mypy | |
| run: | | |
| python -m pip install mypy --force-reinstall | |
| - name: Run mypy | |
| run: | | |
| python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report | |
| - name: Upload mypy coverage to Codecov | |
| uses: codecov/codecov-action@v5.3.1 | |
| with: | |
| file: mypy_report/cobertura.xml | |
| flags: mypy | |
| env_vars: PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |