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@shendurelab

Jay Shendure's lab at the University of Washington

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  1. LACHESIS LACHESIS Public

    The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

    C++ 78 30

  2. cfDNA cfDNA Public

    Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

    Python 74 31

  3. MPRAflow MPRAflow Public

    A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

    Python 32 16

  4. mouse-atac mouse-atac Public

    Repo for website and other code for mouse sci-ATAC-seq project

    Python 28 29

  5. single-cell-ko-screens single-cell-ko-screens Public

    Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hill, McFaline-Figueroa et al.

    R 26 11

  6. MIPGEN MIPGEN Public

    One stop MIP design and analysis

    C++ 24 20

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