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sean-otoole/README.md

Hi there! Welcome to my Github Profile! 👋

I'm a molecular biologist, systems neuroscientist, and data scientist! This Github page is largely meant to highlight some notable past projects as well as what I am working on at the moment. I'm interested in learning new concepts, developing my skill set, and making impactful contributions to healthcare. In my free time, I enjoy being with my family, exercising, traveling, and occasionally video gaming.

Please be advised, that the commit history does not fully reflect my coding experience, as much of my work was done previously with private subversion repositories.

Check out my personal website to see some of the projects I've worked on.

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  1. scell_otoole_2023 scell_otoole_2023 Public

    Single-cell RNA-sequencing analysis for publication entitled [Molecularly targetable cell types in mouse visual cortex have distinguishable prediction error responses(https://www.cell.com/neuron/pd…

    R

  2. 2p_neural_activity_otoole_2023 2p_neural_activity_otoole_2023 Public

    Matlab code for the analysis of neural imaging data in awake behaving animals.

    Jupyter Notebook

  3. single_nuclei_seq_widmer_2022 single_nuclei_seq_widmer_2022 Public

    Single-nuclei RNA sequencing analysis for and NMDA receptor viral knockout.

    Jupyter Notebook

  4. BRCA_2024 BRCA_2024 Public

    Spatial transcriptomic analysis of breast cancer data.

    HTML

  5. HODD HODD Public

    Github repository that is a companion to my LinkedIn newsletter entitled home office drug design.

    Jupyter Notebook

  6. PAGEpy PAGEpy Public

    Predictive Analysis of Gene Expression with Python

    Jupyter Notebook 3 2