Merge branch 'main' into auto-update-lock-files-main

Author: ogrisel

.github/workflows/cuda-ci.yml

@@ -18,7 +18,7 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@faf86a6ed7efa889faf6996aa23820831055001a
+        uses: pypa/cibuildwheel@5f22145df44122af0f5a201f93cf0207171beca7
         env:
           CIBW_BUILD: cp313-manylinux_x86_64
           CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014

.github/workflows/emscripten.yml

@@ -67,7 +67,7 @@ jobs:
         with:
           persist-credentials: false
 
-      - uses: pypa/cibuildwheel@faf86a6ed7efa889faf6996aa23820831055001a
+      - uses: pypa/cibuildwheel@5f22145df44122af0f5a201f93cf0207171beca7
         env:
           CIBW_PLATFORM: pyodide
           SKLEARN_SKIP_OPENMP_TEST: "true"

build_tools/azure/pylatest_free_threaded_linux-64_conda.lock

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build_tools/azure/pylatest_pip_scipy_dev_environment.yml

@@ -18,5 +18,5 @@ dependencies:
     - coverage
     - pooch
     - sphinx
-    - numpydoc
+    - numpydoc<1.9.0
     - python-dateutil

build_tools/azure/pylatest_pip_scipy_dev_linux-64_conda.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 7555819e95d879c5a5147e6431581e17ffc5d77e8a43b19c8a911821378d2521
+# input_hash: 1610c503ca7a3d6d0938907d0ff877bdd8a888e7be4c73fbe31e38633420a783
 @EXPLICIT
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@@ -13,20 +13,25 @@ https://repo.anaconda.com/pkgs/main/linux-64/_openmp_mutex-5.1-1_gnu.conda#71d28
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@@ -50,7 +55,7 @@ https://repo.anaconda.com/pkgs/main/noarch/pip-25.1-pyhc872135_2.conda#2778327d2
 # pip packaging @ https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl#sha256=29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484
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 # pip pluggy @ https://files.pythonhosted.org/packages/54/20/4d324d65cc6d9205fabedc306948156824eb9f0ee1633355a8f7ec5c66bf/pluggy-1.6.0-py3-none-any.whl#sha256=e920276dd6813095e9377c0bc5566d94c932c33b27a3e3945d8389c374dd4746
-# pip pygments @ https://files.pythonhosted.org/packages/8a/0b/9fcc47d19c48b59121088dd6da2488a49d5f72dacf8262e2790a1d2c7d15/pygments-2.19.1-py3-none-any.whl#sha256=9ea1544ad55cecf4b8242fab6dd35a93bbce657034b0611ee383099054ab6d8c
+# pip pygments @ https://files.pythonhosted.org/packages/c7/21/705964c7812476f378728bdf590ca4b771ec72385c533964653c68e86bdc/pygments-2.19.2-py3-none-any.whl#sha256=86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b
 # pip roman-numerals-py @ https://files.pythonhosted.org/packages/53/97/d2cbbaa10c9b826af0e10fdf836e1bf344d9f0abb873ebc34d1f49642d3f/roman_numerals_py-3.1.0-py3-none-any.whl#sha256=9da2ad2fb670bcf24e81070ceb3be72f6c11c440d73bd579fbeca1e9f330954c
 # pip six @ https://files.pythonhosted.org/packages/b7/ce/149a00dd41f10bc29e5921b496af8b574d8413afcd5e30dfa0ed46c2cc5e/six-1.17.0-py2.py3-none-any.whl#sha256=4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274
 # pip snowballstemmer @ https://files.pythonhosted.org/packages/c8/78/3565d011c61f5a43488987ee32b6f3f656e7f107ac2782dd57bdd7d91d9a/snowballstemmer-3.0.1-py3-none-any.whl#sha256=6cd7b3897da8d6c9ffb968a6781fa6532dce9c3618a4b127d920dab764a19064
@@ -62,15 +67,15 @@ https://repo.anaconda.com/pkgs/main/noarch/pip-25.1-pyhc872135_2.conda#2778327d2
 # pip sphinxcontrib-serializinghtml @ https://files.pythonhosted.org/packages/52/a7/d2782e4e3f77c8450f727ba74a8f12756d5ba823d81b941f1b04da9d033a/sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl#sha256=6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331
 # pip tabulate @ https://files.pythonhosted.org/packages/40/44/4a5f08c96eb108af5cb50b41f76142f0afa346dfa99d5296fe7202a11854/tabulate-0.9.0-py3-none-any.whl#sha256=024ca478df22e9340661486f85298cff5f6dcdba14f3813e8830015b9ed1948f
 # pip threadpoolctl @ https://files.pythonhosted.org/packages/32/d5/f9a850d79b0851d1d4ef6456097579a9005b31fea68726a4ae5f2d82ddd9/threadpoolctl-3.6.0-py3-none-any.whl#sha256=43a0b8fd5a2928500110039e43a5eed8480b918967083ea48dc3ab9f13c4a7fb
-# pip urllib3 @ https://files.pythonhosted.org/packages/6b/11/cc635220681e93a0183390e26485430ca2c7b5f9d33b15c74c2861cb8091/urllib3-2.4.0-py3-none-any.whl#sha256=4e16665048960a0900c702d4a66415956a584919c03361cac9f1df5c5dd7e813
+# pip urllib3 @ https://files.pythonhosted.org/packages/a7/c2/fe1e52489ae3122415c51f387e221dd0773709bad6c6cdaa599e8a2c5185/urllib3-2.5.0-py3-none-any.whl#sha256=e6b01673c0fa6a13e374b50871808eb3bf7046c4b125b216f6bf1cc604cff0dc
 # pip jinja2 @ https://files.pythonhosted.org/packages/62/a1/3d680cbfd5f4b8f15abc1d571870c5fc3e594bb582bc3b64ea099db13e56/jinja2-3.1.6-py3-none-any.whl#sha256=85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67
 # pip pyproject-metadata @ https://files.pythonhosted.org/packages/7e/b1/8e63033b259e0a4e40dd1ec4a9fee17718016845048b43a36ec67d62e6fe/pyproject_metadata-0.9.1-py3-none-any.whl#sha256=ee5efde548c3ed9b75a354fc319d5afd25e9585fa918a34f62f904cc731973ad
-# pip pytest @ https://files.pythonhosted.org/packages/2f/de/afa024cbe022b1b318a3d224125aa24939e99b4ff6f22e0ba639a2eaee47/pytest-8.4.0-py3-none-any.whl#sha256=f40f825768ad76c0977cbacdf1fd37c6f7a468e460ea6a0636078f8972d4517e
+# pip pytest @ https://files.pythonhosted.org/packages/29/16/c8a903f4c4dffe7a12843191437d7cd8e32751d5de349d45d3fe69544e87/pytest-8.4.1-py3-none-any.whl#sha256=539c70ba6fcead8e78eebbf1115e8b589e7565830d7d006a8723f19ac8a0afb7
 # pip python-dateutil @ https://files.pythonhosted.org/packages/ec/57/56b9bcc3c9c6a792fcbaf139543cee77261f3651ca9da0c93f5c1221264b/python_dateutil-2.9.0.post0-py2.py3-none-any.whl#sha256=a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427
 # pip requests @ https://files.pythonhosted.org/packages/7c/e4/56027c4a6b4ae70ca9de302488c5ca95ad4a39e190093d6c1a8ace08341b/requests-2.32.4-py3-none-any.whl#sha256=27babd3cda2a6d50b30443204ee89830707d396671944c998b5975b031ac2b2c
 # pip meson-python @ https://files.pythonhosted.org/packages/28/58/66db620a8a7ccb32633de9f403fe49f1b63c68ca94e5c340ec5cceeb9821/meson_python-0.18.0-py3-none-any.whl#sha256=3b0fe051551cc238f5febb873247c0949cd60ded556efa130aa57021804868e2
 # pip pooch @ https://files.pythonhosted.org/packages/a8/87/77cc11c7a9ea9fd05503def69e3d18605852cd0d4b0d3b8f15bbeb3ef1d1/pooch-1.8.2-py3-none-any.whl#sha256=3529a57096f7198778a5ceefd5ac3ef0e4d06a6ddaf9fc2d609b806f25302c47
 # pip pytest-cov @ https://files.pythonhosted.org/packages/bc/16/4ea354101abb1287856baa4af2732be351c7bee728065aed451b678153fd/pytest_cov-6.2.1-py3-none-any.whl#sha256=f5bc4c23f42f1cdd23c70b1dab1bbaef4fc505ba950d53e0081d0730dd7e86d5
-# pip pytest-xdist @ https://files.pythonhosted.org/packages/0d/b2/0e802fde6f1c5b2f7ae7e9ad42b83fd4ecebac18a8a8c2f2f14e39dce6e1/pytest_xdist-3.7.0-py3-none-any.whl#sha256=7d3fbd255998265052435eb9daa4e99b62e6fb9cfb6efd1f858d4d8c0c7f0ca0
+# pip pytest-xdist @ https://files.pythonhosted.org/packages/ca/31/d4e37e9e550c2b92a9cbc2e4d0b7420a27224968580b5a447f420847c975/pytest_xdist-3.8.0-py3-none-any.whl#sha256=202ca578cfeb7370784a8c33d6d05bc6e13b4f25b5053c30a152269fd10f0b88
 # pip sphinx @ https://files.pythonhosted.org/packages/31/53/136e9eca6e0b9dc0e1962e2c908fbea2e5ac000c2a2fbd9a35797958c48b/sphinx-8.2.3-py3-none-any.whl#sha256=4405915165f13521d875a8c29c8970800a0141c14cc5416a38feca4ea5d9b9c3
 # pip numpydoc @ https://files.pythonhosted.org/packages/6c/45/56d99ba9366476cd8548527667f01869279cedb9e66b28eb4dfb27701679/numpydoc-1.8.0-py3-none-any.whl#sha256=72024c7fd5e17375dec3608a27c03303e8ad00c81292667955c6fea7a3ccf541

build_tools/azure/test_docs.sh

@@ -14,8 +14,6 @@ if [[ "$scipy_doctest_installed" == "True" ]]; then
     # conda with putting conda in the PATH and source activate, rather than
     # source <conda_root>/etc/profile.d/conda.sh + conda activate.
     cd $TEST_DIR
-    # with scipy-doctest, --doctest-modules only runs doctests (in contrary to
-    # vanilla pytest where it runs doctests on top of normal tests)
-    python -m pytest --doctest-modules --pyargs sklearn
+    python -m pytest --doctest-modules --doctest-only-doctests=true  --pyargs sklearn
     python -m pytest --doctest-modules $doc_rst_files
 fi