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‎docs/dev/_sources/generated/skbio.tree.TreeNode.rst.txt

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.. autosummary::
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:toctree:
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~TreeNode.is_tip
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~TreeNode.is_root
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~TreeNode.has_children
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~TreeNode.root
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~TreeNode.ancestors
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~TreeNode.siblings
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~TreeNode.neighbors
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~TreeNode.has_children
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~TreeNode.is_root
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~TreeNode.is_tip
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~TreeNode.lca
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~TreeNode.neighbors
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~TreeNode.path
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~TreeNode.root
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~TreeNode.siblings
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.. rubric:: Tree traversal
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.. autosummary::
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:toctree:
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~TreeNode.traverse
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~TreeNode.preorder
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~TreeNode.levelorder
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~TreeNode.non_tips
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~TreeNode.postorder
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~TreeNode.pre_and_postorder
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~TreeNode.levelorder
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~TreeNode.preorder
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~TreeNode.tips
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~TreeNode.non_tips
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~TreeNode.traverse
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.. rubric:: Tree copying
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:toctree:
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~TreeNode.append
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~TreeNode.bifurcate
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~TreeNode.extend
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~TreeNode.insert
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~TreeNode.pop
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~TreeNode.prune
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~TreeNode.remove
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~TreeNode.remove_by_func
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~TreeNode.remove_deleted
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~TreeNode.prune
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~TreeNode.shear
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~TreeNode.shuffle
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~TreeNode.unpack
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~TreeNode.unpack_by_func
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~TreeNode.bifurcate
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~TreeNode.shuffle
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.. rubric:: Tree rerooting
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.. autosummary::
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:toctree:
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~TreeNode.root_at
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~TreeNode.root_at_midpoint
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~TreeNode.root_by_outgroup
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~TreeNode.unroot
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~TreeNode.unrooted_copy
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~TreeNode.unrooted_deepcopy
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~TreeNode.unrooted_move
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~TreeNode.root_at
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~TreeNode.root_at_midpoint
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~TreeNode.root_by_outgroup
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.. rubric:: Tree searching
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.. autosummary::
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:toctree:
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~TreeNode.has_caches
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~TreeNode.clear_caches
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~TreeNode.cache_attr
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~TreeNode.assign_ids
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~TreeNode.index_tree
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~TreeNode.cache_attr
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~TreeNode.clear_caches
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~TreeNode.create_caches
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~TreeNode.has_caches
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~TreeNode.find
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~TreeNode.find_all
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~TreeNode.find_by_id
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~TreeNode.find_by_func
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~TreeNode.find_by_id
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~TreeNode.index_tree
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.. rubric:: Tree analysis
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.. autosummary::
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:toctree:
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~TreeNode.count
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~TreeNode.subset
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~TreeNode.subsets
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~TreeNode.bipart
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~TreeNode.biparts
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~TreeNode.assign_supports
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~TreeNode.is_bifurcating
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~TreeNode.observed_node_counts
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~TreeNode.cophenet
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~TreeNode.count
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~TreeNode.depth
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~TreeNode.height
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~TreeNode.total_length
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~TreeNode.distance
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~TreeNode.height
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~TreeNode.is_bifurcating
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~TreeNode.maxdist
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~TreeNode.cophenet
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~TreeNode.observed_node_counts
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~TreeNode.subset
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~TreeNode.subsets
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~TreeNode.total_length
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.. rubric:: Tree comparison
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.. autosummary::
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:toctree:
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~TreeNode.compare_rfd
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~TreeNode.compare_wrfd
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~TreeNode.compare_subsets
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~TreeNode.compare_biparts
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~TreeNode.compare_cophenet
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~TreeNode.compare_rfd
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~TreeNode.compare_subsets
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~TreeNode.compare_wrfd
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.. rubric:: Tree visualization
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.. autosummary::
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:toctree:
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~TreeNode.assign_supports
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~TreeNode.from_linkage_matrix
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~TreeNode.from_taxonomy
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~TreeNode.to_taxonomy
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~TreeNode.from_taxdump
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~TreeNode.from_taxonomy
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~TreeNode.to_taxonomy
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‎docs/dev/diversity.html

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Counts vectors are <cite>array_like</cite>: anything that can be converted into a 1-D
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numpy array is acceptable input. For example, you can provide a numpy array or
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‎docs/dev/generated/skbio.alignment.AlignPath.from_bits.html

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‎docs/dev/generated/skbio.alignment.AlignPath.from_coordinates.html

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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#skbio.alignment.AlignPath.from_coordinates"><code class="docutils literal notranslate"><span class="pre">AlignPath.from_coordinates</span></code></a></li>
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‎docs/dev/generated/skbio.alignment.AlignPath.from_indices.html

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‎docs/dev/generated/skbio.alignment.AlignPath.from_tabular.html

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‎docs/dev/generated/skbio.alignment.AlignPath.html

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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#skbio.alignment.AlignPath.__str__"><code class="docutils literal notranslate"><span class="pre">AlignPath.__str__()</span></code></a></li>
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#skbio.alignment.AlignPath.__str__"><code class="docutils literal notranslate"><span class="pre">AlignPath.__str__</span></code></a></li>
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‎docs/dev/generated/skbio.alignment.AlignPath.to_bits.html

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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#skbio.alignment.AlignPath.to_bits"><code class="docutils literal notranslate"><span class="pre">AlignPath.to_bits</span></code></a></li>
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‎docs/dev/generated/skbio.alignment.AlignPath.to_coordinates.html

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‎docs/dev/generated/skbio.alignment.AlignPath.to_indices.html

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‎docs/dev/generated/skbio.alignment.AlignmentStructure.html

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‎docs/dev/generated/skbio.alignment.AlignmentStructure.is_zero_based.html

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‎docs/dev/generated/skbio.alignment.AlignmentStructure.set_zero_based.html

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‎docs/dev/generated/skbio.alignment.PairAlignPath.from_bits.html

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‎docs/dev/generated/skbio.alignment.PairAlignPath.from_cigar.html

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‎docs/dev/generated/skbio.alignment.PairAlignPath.html

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‎docs/dev/generated/skbio.alignment.PairAlignPath.to_bits.html

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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#skbio.alignment.PairAlignPath.to_bits"><code class="docutils literal notranslate"><span class="pre">PairAlignPath.to_bits()</span></code></a></li>
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‎docs/dev/generated/skbio.alignment.PairAlignPath.to_cigar.html

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