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‎docs/dev/_sources/generated/skbio.diversity.vectorize_counts_and_tree.rst.txt

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skbio.diversity.vectorize\_counts\_and\_tree
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============================================
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.. currentmodule:: skbio.diversity
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.. autofunction:: vectorize_counts_and_tree

‎docs/dev/diversity.html

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<section id="utility-functions">
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<h2>Utility functions<a class="headerlink" href="#utility-functions" title="Link to this heading">#</a></h2>
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<div class="pst-scrollable-table-container"><table class="autosummary longtable table autosummary">
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<tbody>
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<tr class="row-odd"><td><p><a class="reference internal" href="generated/skbio.diversity.vectorize_counts_and_tree.html#skbio.diversity.vectorize_counts_and_tree" title="skbio.diversity.vectorize_counts_and_tree"><code class="xref py py-obj docutils literal notranslate"><span class="pre">vectorize_counts_and_tree</span></code></a>(counts, taxa, tree)</p></td>
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<td><p>Index tree and convert counts to np.array in corresponding order.</p></td>
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</tr>
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</tbody>
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</table>
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</section>
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<section id="introduction">
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<h2>Introduction<a class="headerlink" href="#introduction" title="Link to this heading">#</a></h2>
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<p>A community (i.e., sample) is represented by a vector of frequencies of taxa
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#beta-diversity">Beta diversity</a><ul class="nav section-nav flex-column">
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#utility-functions">Utility functions</a></li>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#introduction">Introduction</a><ul class="nav section-nav flex-column">
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#input-validation">Input validation</a></li>
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#count-vectors">Count vectors</a></li>

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