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BUG: when providing a gene list file, the bed file is not correctly generated

enhancementNew feature or requestNew feature or request

Status: Open.

#57 In scholl-lab/vcf-filtering;

· berntpopp opened on Nov 29, 2024

Feature request: Add a Snakemake Script

enhancementNew feature or requestNew feature or request

Status: Open.

#56 In scholl-lab/vcf-filtering;

· berntpopp opened on Sep 5, 2024

Feature Request: Add Option to Generate Subset BAMs for Screenshots and Variant Confirmation

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In scholl-lab/vcf-filtering;

· berntpopp opened on Aug 1, 2024

Bug: Empty Outputs in Tumor-Only Analysis with Numbered GEN[1] Fields

bugSomething isn't workingSomething isn't working

Status: Open.

#54 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 19, 2024

Bug: Fields with Commas Converted to Numbers in Excel

bugSomething isn't workingSomething isn't working

Status: Open.

#53 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 19, 2024

Bug: Improve Debug Level Implementation for Clarity and Consistency

bugSomething isn't workingSomething isn't working

Status: Open.

#52 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 19, 2024

Bug: Fixed output separator causing Excel conversion issues

bugSomething isn't workingSomething isn't working

Status: Open.

#50 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 19, 2024

Bug: Samples file required even if empty, causing pipeline failure

bugSomething isn't workingSomething isn't working

Status: Open.

#49 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 19, 2024

Bug: Incorrect output file format when specifying XLSX output without output file

bugSomething isn't workingSomething isn't working

Status: Open.

#48 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 19, 2024

Bug: Genotypes Not Added in replace_gt_with_sample.sh When Using Probands File

bugSomething isn't workingSomething isn't working

Status: Open.

#47 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 13, 2024

Feature request: Change workflow to allow a unified sample file

enhancementNew feature or requestNew feature or request

Status: Open.

#43 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 12, 2024

Tests: Add tests to all scripts and add test data

enhancementNew feature or requestNew feature or request

Status: Open.

#42 In scholl-lab/vcf-filtering;

· berntpopp opened on Jul 12, 2024