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brain-network-viz

Brain network visualization tool (python)

Run example/render_inputs.sh for a minimal example

================= Readme:

Command line options/flags:

-n N: N is the path to the Node csv file -n is a required argument

-e E: E is the path to the Edge csv file -a A: A is the path to the Adjacency Matrix csv file Either -e or -a option should be used.

-l L: L is the path to the lobe csv file Use if you want to specify the extents of the lobes manually

-s S: S is a number that specifies that only edges with a weight in the top s percent of the full range of edge weights will be rendered -t T: T is a number that specifies that t% of edges will be rendered. Those edges will be those with the highest weights. If there is a tie between candidates of the same weight, it will be broken non-deterministically Either -s, or -t, or neither can be used, but not both at the same time.

-o O: O is the path to the output file Optional (default is fmri-viz.pdf)

================= Development Team:

David Moench (University of Texas at Austin), Muhibur Rasheed (University of Texas at Austin), Oluwasanmi Koyejo (Stanford University)

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