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rngoodman/README.md

👋 Hey, I'm Richard Goodman (@rngoodman)

  • 📍 I’m currently a Postdoc at the Liverpool School of Tropical Medicine (LSTM)
  • 🧫 I'm looking at antimicrobial resistance (AMR) in Gram-negative bacteria
  • 👀 I’m interested in bacterial genomics and bioinformatics
  • ✏️ Code and scripts from my papers are published as repositories on Github
  • 🧑‍💻 I have a range of bioinformatics tutorials and workflows published as repositories on Github, feel free to check them out
  • 📫 Reach me on X, Bluesky or Linkedin

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  1. tutorials tutorials Public

    📚 A repository of repositories containing bioinformatics workflows & tutorials

    HTML

  2. research-paper-code research-paper-code Public

    📃 A repository of repositories containing code and scripts used in research articles, papers and preprints

    HTML

  3. ShortSeeker ShortSeeker Public

    🧬 Automated short-read bacterial genome assembly and analysis tool implemented in Snakemake.

    Python

  4. co-occurrence-analysis co-occurrence-analysis Public

    ↔️ Co-occurrence analysis of AMR genes highlights the genetic location of AMR genes relative to each other across genomes

    HTML

  5. circular-genome-comparisons circular-genome-comparisons Public

    🔘 Using circos plots to visualise genome comparisons between two genomes

    HTML 1

  6. ANI-and-SNP-distances ANI-and-SNP-distances Public

    🪜ANI and SNP distance matrices for comparing relatedness of genomes

    HTML