3d-mri-volume-visualizer-v2

This application provides a GUI for visualizing brain, label and prediction images for observing the model predictions using VTK and PySide6. Users can load NIFTI files, visualize them in 3D, and save a rotating view as an MP4 file.

The updated version includes a slice viewer for cross-sectional analysis and a mesh viewer for 3D surface visualization.

Note: This version does not include the segmentation function. For the segmentation version, please refer to the seg branch.

Requirements

• Python 3.9
• Required Python Libraries:
  • imageio==2.37.0
  • imageio-ffmpeg==0.6.0
  • matplotlib==3.9.4
  • numpy==2.0.2
  • PySide6==6.8.1.1
  • vtk==9.4.1
  • scipy==1.13.1
  • plotly==6.0.0
  • SimpleITK==2.4.1

Install dependencies via pip:

pip install -r requirements.txt

Usage

Run the following command to start the application:

python run.py