Cell fate prediction of blood stem cells with CNNs

A couple of python notebooks to recapitulate the analysis done in [Buggenthin2017]. See this notebook for an overview.

Contributed to the KAIST Bio-IT Healthcare Initiative Workshop on Single Cell Systems Biology, 2017

Original paper

[Buggenthin2017] Prospective identification of hematopoietic lineage choice by deep learning
Felix Buggenthin, Florian Buettner, Philipp S Hoppe, Max Endele, Manuel Kroiss, Michael Strasser, Michael Schwarzfischer, Dirk Loeffler, Konstantinos D Kokkaliaris, Oliver Hilsenbeck, Timm Schroeder, Fabian J Theis, Carsten Marr

Nature Methods 14, 403–406 (2017)

Original Code