This repository contains the scripts and code for the "Morphodynamics of human early brain organoid development" paper (Jain, Gut et al., 2025).
The corresponding raw single-cell RNA sequencing data is publicly available through ArrayExpress under accession number: E-MTAB-15057.
The processed scRNAseq datasets (Seurat objects) required to run these scripts are available for download via Zenodo (10.5281/zenodo.15236859). Additional .csv and .txt files required to run the code are provided in the sub-directories along with each script.
We are currently refactoring/reworking the code base. Stay tuned for updates!