Add fake env file #4
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| name: lint-pr | |
| # Run on PR changing files in plugins dir against main | |
| on: | |
| pull_request: | |
| branches: | |
| - 'main' | |
| paths: | |
| - '/plugins/**' | |
| jobs: | |
| lint-yml: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| ENV_FILES: ${{ steps.lint.outputs.ENV_FILES }} | |
| steps: | |
| # Checkout new commit and prior HEAD | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| # Get diff | |
| # This feels odd to me got it from | |
| # https://docs.github.com/en/actions/writing-workflows/choosing-what-your-workflow-does/workflow-commands-for-github-actions#multiline-strings | |
| - name: Get Diff | |
| run: | | |
| { | |
| echo 'DIFF<<EOF' | |
| git diff --name-only HEAD~ HEAD | |
| echo EOF | |
| } >> "$GITHUB_ENV" | |
| # Lint all plugins/** files in diff (filtering of diff occurs in Python) | |
| # Also gets all env files in added plugins for env testing | |
| - name: Lint Yml and Get Env Files | |
| id: lint | |
| run: python .github/scripts/lint.py ${{ secrets.GITHUB_TOKEN }} $DIFF | |
| # Install all envs found and at least make sure `qiime info` runs | |
| # TODO: Make this attempt to run pytest? | |
| test-envs: | |
| needs: lint-yml | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-13] | |
| url: ${{ fromJSON(needs.lint-yml.outputs.ENV_FILES) }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| prefix: ./test | |
| steps: | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: '' | |
| architecture: 'x64' | |
| auto-activate-base: true | |
| miniconda-version: 'latest' | |
| # Hacky stff to make it so I can activate the conda env for testing | |
| - name: Set up Test Environment | |
| env: | |
| url: ${{ matrix.url }} | |
| run: | | |
| conda env create -y -p ${{ env.prefix }} -f $url | |
| mkdir -p ${{ env.prefix }}/etc | |
| cat <<EOF > '${{ env.prefix }}/etc/activate.sh' | |
| . "$CONDA/etc/profile.d/conda.sh" | |
| conda activate '${{ env.prefix }}' | |
| EOF | |
| chmod +x 'test/etc/activate.sh' | |
| - name: Test | |
| run: | | |
| source ${{ env.prefix }}/etc/activate.sh | |
| conda activate ${{ env.prefix }} | |
| qiime info | |
| # Grab the target repo and validate it? | |
| # Description? | |
| # README? | |
| # Env files? |