phaseParentalHaplotype.py -f -i ./4314_ABCDEF.final.snp.AB_BA_family.geno.full.vcf -r ./TAIR10_chr_all.genome.sizes -c ./centromeres_rowan.txt -o 4314_ABCDEF.final.snp.AB_BA_family.geno.A.phase > 4314_ABCDEF.final.snp.AB_BA_family.geno.A.phase.log
phaseParentalHaplotype.py -m -i ./4314_ABCDEF.final.snp.AB_BA_family.geno.full.vcf -r ./TAIR10_chr_all.genome.sizes -c ./centromeres_rowan.txt -o 4314_ABCDEF.final.snp.AB_BA_family.geno.B.phase > 4314_ABCDEF.final.snp.AB_BA_family.geno.B.phase.log